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Screening SMAD1,SMAD2, SMAD3, andSMAD5 for germline mutations in juvenile polyposis syndrome
  1. S Bevana,
  2. K Woodford-Richensb,
  3. P Rozenc,
  4. C Engd,
  5. J Younge,
  6. M Dunlopf,
  7. K Nealeg,
  8. R Phillipsg,
  9. D Markieh,
  10. M Rodriguez-Bigasi,
  11. B Leggette,
  12. E Sheridanj,
  13. S Hodgsonk,
  14. T Iwamal,
  15. D Ecclesm,
  16. W Bodmern,
  17. R Houlstona,
  18. I Tomlinsonb
  1. aSection of Cancer Genetics, Haddow Laboratories, Institute of Cancer Research, Sutton, UK, bMolecular and Population Genetics Laboratory, Imperial Cancer Research Fund, London WC2A 3PX, UK, cDepartment of Gastroenterology, Tel Aviv Medical Centre and Medical School, IL-64239 Tel Aviv, Israel, dTranslational Research Laboratory, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02115-6084, USA, eConjoint Gastroenterology Laboratory, Clinical Research Centre, Royal Brisbane Hospital Foundation, Herston, Brisbane, Australia, fMRC Human Genetics Unit, Western General Hospital, Crewe Road, Edinburgh EH4 2XU, UK, gPolyposis Registry, St Mark’s Hospital, Harrow HA1 3UJ, UK, hMolecular Genetics Laboratory, Dunedin School of Medicine, Dunedin, New Zealand, iRoswell Park Cancer Institute, Buffalo, New York 14263, USA, jDepartment of Clinical Genetics, Royal Hospital for Children, St Michael’s Hill, Bristol, UK, kDepartment of Clinical Genetics, Guy’s Hospital, St Thomas’s Street, London SE1 9RT, UK, lCentre for Polyposis and Intestinal Diseases, Bunkyo-Ku, Tokyo, Japan, mWessex Regional Genetics Service, Princess Anne Hospital, Southampton SO16 5YA, UK, nCancer Immunogenetics Laboratory, ICRF, Institute of Molecular Medicine, Oxford OX3 9DS, UK
  1. Dr R Houlston, Molecular and Population Genetics Laboratory, 4th Floor, Imperial Cancer Research Fund, London WC2A 3PX, UK.

Abstract

BACKGROUND AND AIMS Juvenile polyps occur in several Mendelian disorders, whether in association with gastrointestinal cancer alone (juvenile polyposis syndrome, JPS) or as part of known syndromes (Cowden, Gorlin, and Bannayan-Zonana) in association with developmental abnormalities, dysmorphic features, or extraintestinal tumours. Recently, some JPS families were shown to harbour germline mutations in theSMAD4 (DPC4) gene, providing further evidence for the importance of the TGFβ signalling pathway in colorectal cancer. There remains, however, considerable, unexplained genetic heterogeneity in JPS. Other members of the SMAD family are excellent candidates for JPS, especiallySMAD2 (which, likeSMAD4, is mutated somatically in colorectal cancers), SMAD3 (which causes colorectal cancer when “knocked out” in mice),SMAD5, and SMAD1.

METHODS SMAD1,SMAD2, SMAD3, andSMAD5 were screened for germline mutations in 30 patients with JPS and without SMAD4mutations.

RESULTS No mutations were found in any of these genes. A G–A C89Y polymorphism with possible effects on protein function was found in SMAD3, but the frequencies of the G and A alleles did not differ between patients with JPS and controls.

CONCLUSIONS It remains to be determined whether or not this polymorphism is involved in a minor predisposition to colorectal or other carcinomas.SMAD4 may be the only member of the SMAD family which causes JPS when mutant in the germline. The other genes underlying JPS remain to be identified.

  • juvenile polyposis
  • SMAD
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Juvenile polyps are hamartomatous lesions of the large bowel, stomach, and small bowel which have a characteristic smooth histological appearance, predominant stroma, cystic spaces, and lack of a smooth muscle core. Multiple juvenile polyps usually occur in a number of Mendelian disorders. Sometimes these polyps occur with specific associated features, for example, in Cowden, Gorlin, and Bannayan-Zonana syndromes.1 Other patients have juvenile polyps which occur predominantly in the large bowel and stomach and which are associated with progression to carcinoma; these patients are usually said to have juvenile polyposis syndrome (JPS, MIM174900).

Although it has been reported that some patients with JPS have germlinePTEN mutations,2 this contention remains controversial and the only proven cause of JPS is a germline mutation in the SMAD4(DPC4) gene (chromosome 18q21.1).3 SMAD4 was originally identified by studying homozygous deletions in pancreatic cancer, but this tumour suppressor gene is also mutated in some colorectal carcinomas.4 SMAD4 protein acts as a trimer, with the interface between the molecules towards the C terminus. Six other members of the SMAD family have been identified in humans; each of these is a homologue of the others and plays a different role in signal transduction from transforming growth factor β (TGFβ) and other related molecules. Somatic mutations in SMAD2 have been found in colorectal and other cancers.4 5 Like SMAD4, SMAD2 has activating C terminal domains and autoinhibitory domains at the N terminal: thus, classically, inactivating mutations occur at the C terminal of both proteins, whereas gain of function missense mutations may occur at the N terminal.6 The TGFβ type I receptor phosphorylates SMAD2 which then complexes with SMAD4.7 The complex proceeds to the nucleus and initiates transcription. SMADs 2 and 3 are structurally similar and SMAD3 may act in a similar fashion to SMAD2.8 SMADs 1 and 5 are activated by molecules such as bone morphogenetic protein, and then proceed to the nucleus where they probably interact with SMAD4 and initiate transcription.9 Unlike the other known members of the family, SMADs 6 and 7 play a role in inhibiting TGFβ signalling.10 11

There is accumulating evidence that the TGFβ pathway is of central importance in colorectal carcinogenesis: a large proportion of sporadic colon cancers with microsatellite instability have TGFβ type II receptor mutations12; germline variants in the TGFβ type II receptor may predispose to colon cancer13; the downstream targets of TGFβ (SMADs 2 and 4) have been implicated in colorectal tumorigenesis; germline SMAD4 mutations predispose to juvenile polyps and colon cancer in humans; and germlineSmad3 mutations cause colon cancer in mice.14 SMAD4 mutations probably do not account for the majority of JPS cases, however,3 15 and the other members of the SMAD family are therefore excellent candidate genes for JPS. Based on their known roles and mutations in cancers, it is likely that SMADs 2 and 3 are the best candidates, followed by SMADs 5 and 1, with SMADs 6 and 7 weaker candidates. The genomic structure is known for SMADs 2, 3, and 5. We have previously tested a set of 21 patients with JPS for germlineSMAD4 variants and found just one mutation. Here, we present the results of testing 30 unrelated patients with JPS without SMAD4 mutations for germline mutations at SMAD1,SMAD2, SMAD3, andSMAD5.

Methods

PATIENT SELECTION

Patients with JPS were identified from sources in the UK, Israel, Australia, USA, and Japan. No patient had clinical features suggestive of Cowden, Gorlin, or Bannayan-Zonana syndromes. None had germlineSMAD4 mutations15 after screening exons and intron-exon boundaries using conformation specific gel electrophoresis (CSGE). Standard diagnostic criteria for JPS were used, in that affected individuals had either five or more juvenile polyps throughout the gastrointestinal tract or any number of juvenile polyps and a family history of JPS. All affected individuals had more than one typical juvenile polyp as confirmed by histology. Fourteen patients had a known family history of JPS. Sixteen patients had no known relative affected with juvenile polyps, although in some cases, relatives had developed colon carcinoma. DNA was extracted from blood samples from appropriate individuals using standard methods.

MUTATION SCREEN

Oligonucleotides were designed to amplify each exon of theSMAD2, SMAD3, andSMAD5 genes (including splice sites) specifically from genomic DNA by the polymerase chain reaction (PCR) (table 1). The genomic structure of SMAD1 is not known and cDNA was therefore prepared from a subset of 10 patients with lymphoblastoid lines using the Pharmacia (Uppsala, Sweden) Quick Prep Micro and First Strand Kits; oligonucleotides (table 1) were designed for nested amplification of the SMAD1 cDNA in four parts. SMAD3 andSMAD1 were screened by direct sequencing of purified PCR products in forward and reverse orientations using the ABI Ready Reaction Dye Terminator Cycle Sequencing kit and the 377 Prism sequencer. The search for germline mutations in theSMAD2 and SMAD5genes was performed using CSGE. All samples with possible mutations on sequencing or with CSGE bandshifts were sequenced in forward and reverse orientations after reamplification of the appropriate exon or cDNA region in the PCR. Mutations and polymorphisms were confirmed, if possible, using wild type or mutant specific restriction endonuclease digestion of the PCR product in question.

Table 1

Primers and PCR annealing temperature for SMAD amplifications

Results and discussion

No pathogenic mutations in SMAD1, SMAD2, SMAD3, or SMAD5 were found in any of the patients with JPS screened. Two variants were, however, detected inSMAD3. One of these represents a known synonymous G–A polymorphism at position 3 of codon 103, encoding alanine. The second polymorphism in exon two has not been reported previously and is a non-synonymous G–A difference in position 2 of codon 89. This base change results in a cysteine to tyrosine amino acid substitution. The polymorphism was confirmed usingFnu 4H1 restriction enzyme digestion of a 490 base pair fragment which was amplified using the forward primer of exon2–3 part one, and the reverse primer of exon2–3 part 2 (table 1). Digestion with Fnu 4H1 was performed on the patient cohort and a panel of 25 control individuals (table 2). The observed frequency of the codon 89 alleles was very similar in both of these groups, suggesting that this polymorphism is not a factor important in the development of JPS. However, this polymorphism may not be without functional effect, as the change involves loss of a cysteine residue (within a β pleated sheet) which is conserved evolutionarily not only in the human, rat, mouse,Drosophila, and C elegans homologues of SMAD3, but also in the human SMAD1, SMAD2, SMAD3, andSMAD5 genes. This polymorphism is therefore a candidate locus for conferring a minor genetic predisposition to colorectal or other gastrointestinal carcinomas, especially given the occurrence of colorectal cancer in Smad3“knockout” mice.14

Table 2

Genotype frequencies for exon 2 codon 89 polymorphism

We have excluded germline mutations in SMAD1, SMAD2, SMAD3, and SMAD5 as causes of JPS. The other members of the SMAD family—SMAD6, SMAD7, and quite possibly other, undiscovered homologues—have not been excluded, but SMAD6 andSMAD7 seem to be a priori weaker candidates than the other known SMAD genes (see above). The question remains as to why SMAD4 alone is, so far, implicated in JPS. The SMAD4 protein seems to have the central role in signal transduction through the SMAD pathway, interacting with all the other SMAD molecules and forming an unusual trimeric structure, which is probably disrupted by pathogenic mutations in JPS. Despite the finding of occasional SMAD2 mutations in cancers, there may exist a degree of redundancy between the other SMAD members, especially SMADs 2 and 3, SMADs 1 and 5, and SMADs 6 and 7 which means that germline mutations in any one of these genes do not lead to juvenile polyposis. There is considerable unexplained genetic heterogeneity in juvenile polyposis, with remaining potential for discovering new colon cancer genes by studying these families.

Acknowledgments

We thank the ICRF, CRC, and Coeliac Society for support. Mike Sternberg provided very useful advice on protein structure and function.

References

View Abstract

Footnotes

  • Abbreviations used in this paper:
    CSGE
    conformation specific gel electrophoresis
    JPS
    juvenile polyposis syndrome
    TGF
    transforming growth factor

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