Gene
|
HP No2-151
|
Primer
|
Primer sequence
|
Location2-150/+
|
Size (bp)
|
Ref
|
cagA 5′
| HP547 | F1 | 5′ GATAACAGGCAAGCTTTTGAGGGA | 19119 | 349 |
6
|
| | B1 | 5′ CTGCAAAAGATTGTTTGGCAGA | 19468 | | |
cagA 3′
| HP547 | cag2 | 5′ GGAACCCTAGTCGGTAATG | 21498 | 449 |
25
|
| | cag4 | 5′ ATCTTTGAGCTTGTCTATCG | 21947 | | |
cagE
| HP544 | picBF | 5′ TGTTTGGTTTCCCTG | 16998 | 1335 |
26
|
| | picBR | 5′ ACGCATTCCTTAACG | 15663 | | |
cagE
| HP544 | cagEF | 5′ TCTATAAAGAGAGAGGTGTT | 17170 | 2719 |
16
|
| | cagER | 5′ GGCTAATCTTTGGTAATCAG | 14451 | | |
cagM
| HP537 | cagMF | 5′ ATGCTTGCAAAAATTGTTTT | 7772 | 1130 |
16
|
| | cagMR | 5′ CTATTCAAAGGGATTATTCT | 8902 | | |
cagM
| HP537 | cag5 | 5′ ACAAATACAAAAAAGAAAAAGAGGC | 8022 | 586 |
15
|
| | cag6 | 5′ ATTTTTCAACAAGTTAGAAAAAGCC | 8608 | | |
cagQ−
| HP535 | CAG12 | 5′ GCAATCATTGAGAAGAGTTTTCGC | 1945 | |
15
|
cagS
| HP534 | CAG7 | 5′ TTTGGTTGGTAATGGTTTTGGTAGC | 6268 | | |
cagQ−
| HP535 | cagTF2 | 5′ GTTTGCTCAGTGGTAAGTGA | 1167 | |
16
|
cagT
| HP532 | cagQR | 5′ ATGCTTCCTACTAAAACACG | 6569 | | |
cagT
| HP532 | CAG13 | 5′ TCTAAAAAGATTACGCTCATAGGCG | 610 | 590 |
15
|
| | CAG14 | 5′ CTTTGGCTTGCATGTTCAAGTTGCC | 1100 | | |
cagT
| HP532 | cagTF | 5′ ATGAAAGTGAGAGCAAGTGT | 21480 | 842 |
16
|
| | cagTR | 5′ TCACTTACCACTGAGCAAAC | 22322 | | |
cag13
| HP527 | cag13F | 5′ GCTAGAGAAAAGGCTGTTGC | 12771 | 402 |
16
|
| | cag13R | 5′ TGGCGTTAATAGTGGCAATA | 12369 | | |
cag6−
| HP520 | cag67F | 5′ ATGGCAACATGGAGATGGTT | 4289 | 885 |
16
|
cag7
| HP521 | cag67R | 5′ TTAGTTTCCTTTTTTTTCAG | 5174 | | |
cag5−
| HP519 | LECF | 5′ ACATTTTGGCTAAATAAACGCTG | 3920 | 3370 |
16
|
cag10
| HP524 | cag10R | 5′ TGGGTTCAAGCGAACTGTGA | 7290 | | |
tnpA
| | CAG10 | 5′ ATCAGTCCAAAAAGTTTTTTCTTTCC | 4270 | 344 |
15
|
| | CAG11 | 5′ TAAGGGGGTATATTTCAACCAACCG | 4614 | | |
tnpB
| | CAG8 | 5′ CGCTCTCCCTAAATTCAAAGAGGGC | 5079 | 569 |
15
|
| | CAG9 | 5′ AGCTAGGGAAAAATCTGTCTATGCC | 5648 | | |