Bacteria | | | | | | | | | | | | |
Aeromonas spp | 475 | 0 | 0 | 0 | 0 | 0 | 372 | 0 | 0 | 0 | 0 | 0 |
Bacillus spp | 182 | 43 152 | 17 261 | 104 | 269 | 0 | 47 | 11 144 | 4458 | 27 | 70 | 0 |
Campylobacter spp | 38 536 | 247 860 | 118 029 | 11 685 | 43 234 | 59 | 55 888 | 359 466 | 171 174 | 16 946 | 62 701 | 86 |
Clostridium perfringens | 805 | 276 266 | 145 403 | 1163 | 17 216 | 291 | 245 | 84 081 | 44 253 | 354 | 5240 | 89 |
Cl difficile cytotoxin | 1681 | 0 | 0 | 0 | 0 | 0 | 14 648 | 0 | 0 | 0 | 0 | 0 |
VTEC O157 | 470 | 522 | 522 | 198 | 1128 | 11 | 896 | 995 | 995 | 377 | 2149 | 22 |
Non O157 VTEC | 0 | 58 | 58 | 22 | 125 | 1 | 0 | 111 | 111 | 42 | 240 | 2 |
Other Escherichia coli | 0 | 62 050 | 13 850 | 319 | 1561 | 6 | 0 | 62 050 | 13 850 | 319 | 1561 | 6 |
Listeria monocytogenes | 106 | 210 | 210 | 210 | 3759 | 74 | 98 | 194 | 194 | 194 | 3473 | 68 |
Salmonellas non-typhoidal | 31 733 | 99 260 | 70 900 | 3616 | 20 972 | 284 | 15 036 | 41 616 | 29 726 | 1516 | 8793 | 119 |
S paratyphi | 125 | 16 | 16 | 5 | 32 | 0 | 154 | 85 | 85 | 27 | 170 | 0 |
S typhi | 198 | 34 | 34 | 14 | 95 | 0 | 165 | 96 | 96 | 39 | 267 | 0 |
Shigella spp | 18 069 | 3778 | 3778 | 87 | 452 | 2 | 966 | 202 | 202 | 5 | 24 | 0 |
Staphylococcus aureus | 112 | 25 493 | 10 197 | 642 | 771 | 0 | 10 | 2276 | 910 | 57 | 69 | 0 |
Vibrio cholerae O1/O139 | 9 | 0 | 0 | 0 | 0 | 0 | 12 | 0 | 0 | 0 | 0 | 0 |
V cholerae non O1/O139 | 56 | 108 | 54 | 4 | 17 | 0 | 23 | 126 | 63 | 5 | 19 | 0 |
Other vibrio species | 15 | 65 | 33 | 1 | 4 | 0 | 48 | 364 | 182 | 5 | 21 | 2 |
Yersinia spp | 369 | 392 753 | 33 569 | 1880 | 16 543 | 10 | 42 | 45 144 | 3858 | 216 | 1901 | 1 |
| 92 941 | 1 151 625 | 413 914 | 19 950 | 106 178 | 738 | 88 650 | 607 950 | 270 158 | 20 129 | 86 697 | 395 |
| | | | | | | | | | | | |
Parasites | | | | | | | | | | | | |
Cryptosporidium parvum | 5179 | 2024 | 1065 | 38 | 142 | 3 | 5278 | 2063 | 1086 | 39 | 145 | 3 |
Cyclospora cayatenensis | 0 | 0 | 0 | 0 | 0 | 0 | 52 | 992 | 522 | 3 | 10 | 0 |
Giardia duodenalis | 6830 | 2402 | 1264 | 8 | 26 | 0 | 3892 | 1673 | 881 | 5 | 18 | 0 |
| 12 009 | 4426 | 2329 | 46 | 168 | 3 | 9222 | 4728 | 2488 | 47 | 173 | 3 |
| | | | | | | | | | | | |
Viruses | | | | | | | | | | | | |
Adenovirus 40/41 | 102 | 0 | 0 | 0 | 0 | 0 | 38 | 0 | 0 | 0 | 0 | 0 |
Astrovirus | 447 | 34 660 | 7877 | 24 | 92 | 8 | 223 | 17 291 | 3930 | 12 | 46 | 4 |
NLV | 865 | 25 618 | 4066 | 16 | 63 | 4 | 1951 | 57 781 | 9172 | 37 | 143 | 9 |
Rotavirus | 16 281 | 8891 | 1482 | 46 | 119 | 4 | 16 454 | 8979 | 1497 | 46 | 121 | 4 |
SLV | 178 | 0 | 0 | 0 | 0 | 0 | 52 | 0 | 0 | 0 | 0 | 0 |
| 17 873 | 69 169 | 13 425 | 86 | 274 | 16 | 18 718 | 84 051 | 14 598 | 95 | 310 | 17 |
| | | | | | | | | | | | |
Unknown agents | | 1 644 515 | 208 166 | 1249 | 3497 | 167 | | 642 043 | 81 271 | 488 | 1365 | 65 |
| | | | | | | | | | | | |
Total | 122 823 | 2 869 735 | 637 834 | 21 331 | 110 117 | 924 | 116 590 | 1 338 772 | 368 516 | 20 759 | 88 545 | 480 |