Alignment of sequences of amplimers of desulfovibrios with corresponding regions of 16S rRNA genes of related species*†
| Species | Accession | Forward primer | Position | Reverse primer | Position | ||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C | C | G | T | A | G | A | T | A | T | C | T | G | G | A | G | G | A | A | C | A | T | C | A | G | A | C | A | T | C | T | A | G | C | A | T | C | C | A | T | C | G | T | T | T | A | C | A | G | C | ||||
| *Nucleotides that are different from the target sequence for each organism are shown in underlined bold face. Primer alignment was done using Primer Premier Software. | |||||||||||||||||||||||||||||||||||||||||||||||||||||
| †Sequence position according to 16S rRNA gene in E coli. | |||||||||||||||||||||||||||||||||||||||||||||||||||||
| Desulfovibrios | |||||||||||||||||||||||||||||||||||||||||||||||||||||
| Desulfovibrio spp | AF0566089 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | A | G | A | C | 677 | T | G | T | A | G | A | T | C | G | T | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 812 |
| Desulfovibrio aminophilus | AF067964 | G | G | C | A | T | C | T | A | T | A | T | A | C | C | T | C | C | T | T | G | T | C | G | A | C | 688 | T | G | T | C | G | A | T | C | G | T | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 823 |
| Desulfovibrio oryzae | AF273083 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | A | G | A | C | 696 | T | G | T | C | G | A | T | C | G | T | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 831 |
| Desulfovibrio desulfuricans | AF354664 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | A | G | A | C | 691 | T | G | T | A | G | A | T | C | G | T | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 826 |
| Desulfovibrio gigantus | AF418170 | G | G | C | A | T | C | T | A | T | A | G | C | C | C | T | C | C | T | T | G | T | C | G | G | C | 698 | T | G | T | C | G | A | T | C | T | G | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 833 |
| Desulfovibrio vulgaris | AF418179 | G | G | C | A | T | C | T | G | T | A | G | A | C | C | T | C | C | T | T | G | T | A | G | T | C | 695 | T | G | T | C | G | A | T | C | G | T | A | G | G | T | A | G | C | A | A | A | T | G | G | C | G | 830 |
| Desulfovibrio intestinalis | AJ295680 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | A | G | T | C | 567 | T | G | T | A | G | A | T | C | G | T | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 702 |
| Desulfovibrio magneticus | D43944 | G | G | C | A | T | C | T | A | T | A | G | C | C | C | T | C | C | T | T | G | T | C | G | G | C | 698 | T | G | T | C | G | A | T | C | G | T | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 833 |
| Desulfovibrio gigas | M34400 | A | A | A | C | C | T | C | A | G | A | G | A | C | C | T | C | C | T | T | A | G | A | A | T | C | 435 | T | R | T | C | N | A | T | C | G | T | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 839 |
| Desulfovibrio fairfieldensis | U2221 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | A | G | T | C | 677 | T | G | T | A | G | A | T | C | G | T | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 812 |
| Desulfovibrio gabonensis | U31080 | G | G | C | A | T | C | T | A | T | A | G | G | C | C | T | C | C | T | T | G | T | C | G | T | C | 653 | T | G | T | C | G | A | T | A | G | G | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 788 |
| Desulfovibrio bastinii | U53462 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | C | G | T | C | 658 | T | G | T | C | G | A | T | C | T | T | A | G | G | T | A | G | C | N | N | N | N | G | T | C | G | 793 |
| Desulfovibrio gracilis | U53464 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | C | G | T | C | 658 | T | G | T | C | G | A | T | C | G | T | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 793 |
| Desulfovibrio caledonensis | U53465 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | C | G | G | C | 658 | T | G | T | C | G | A | T | A | T | T | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 793 |
| Desulfovibrio termitidis | X87409 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | A | G | T | C | 676 | T | G | T | C | G | A | T | C | G | T | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 811 |
| Desulfovibrio vietnamensis | X93994 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | C | G | G | C | 676 | T | G | T | C | G | A | T | C | T | T | A | G | G | T | A | G | C | A | A | A | T | G | G | C | G | 811 |
| Desulfovibrio aespoeensis | X95230 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | C | G | G | C | 682 | T | G | T | C | G | A | T | A | T | T | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 817 |
| Desulfovibrio africanus | X99236 | G | G | C | A | T | C | T | A | T | A | G | G | C | C | T | C | C | T | T | G | T | C | G | T | C | 676 | T | G | T | C | G | A | T | C | G | T | A | G | G | T | A | G | C | A | A | A | T | G | G | C | T | 811 |
| Desulfovibrio halophilus | X99237 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | C | G | G | C | 673 | T | G | T | C | G | A | T | C | G | T | A | G | G | T | A | G | C | A | A | A | T | G | G | C | G | 808 |
| Desulfovibrio indonensis | Y09504 | G | G | C | A | T | C | T | A | T | A | G | G | C | C | T | C | C | T | T | G | T | C | G | T | C | 698 | T | G | T | C | G | A | T | A | G | G | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 833 |
| Desulfovibrio alaskensis | Y11984 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | C | G | C | C | 677 | T | G | T | C | G | A | T | C | T | T | A | G | G | T | A | G | C | A | A | A | T | G | G | C | G | 812 |
| Desulfovibrio zosterae | Y18049 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | C | G | T | C | 682 | T | G | T | A | G | A | T | C | G | T | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 817 |
| Desulfovibrio longreachensis | Z24450 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | A | G | T | C | 673 | T | G | T | C | G | A | T | C | G | T | A | G | G | T | A | G | C | A | A | A | T | G | T | C | G | 808 |
| Other SRB genera | |||||||||||||||||||||||||||||||||||||||||||||||||||||
| Desulfotomaculum ruminis | M34418 | G | G | C | A | T | C | T | A | T | T | G | A | C | C | T | C | C | T | T | T | T | C | G | T | C | 956 | T | G | T | C | G | A | T | C | G | T | C | T | G | T | A | G | C | A | A | A | T | G | G | C | G | 1091 |
| Desulfobacter sp. | M34416 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | C | G | G | A | 712 | C | T | G | C | C | A | G | C | A | C | A | A | G | C | G | G | C | G | A | A | A | G | T | A | A | 826 |
| Desulfococcus biacutus | AJ277887 | G | G | C | A | T | C | T | A | T | A | G | A | C | C | T | C | C | T | T | G | T | C | G | G | C | 947 | T | G | T | A | G | A | G | C | C | T | C | C | G | A | A | C | G | C | T | G | G | A | G | C | G | 1518 |
| Desulfobulbus propionicus | M34410 | G | G | C | A | T | C | T | A | T | A | G | G | C | C | T | C | C | T | T | T | T | C | G | G | C | 708 | G | G | T | A | G | A | T | C | T | T | C | A | G | T | A | G | C | A | A | A | T | G | T | C | G | 843 |
| Desulfobacter vibrioformis | U12254 | G | G | C | A | T | C | T | A | T | A | G | T | C | C | T | C | C | T | T | G | T | G | G | C | T | 694 | T | C | T | G | G | T | C | G | A | T | T | G | G | T | A | G | C | A | A | C | G | G | A | A | C | 1284 |
| Desulfococcus multivorans | M34405 | C | G | C | A | T | C | T | A | T | A | G | T | C | C | T | C | C | T | T | G | T | G | G | C | C | 713 | C | C | T | C | T | A | G | C | G | A | N | G | G | G | A | N | N | C | A | T | G | T | C | G | None | |