Article Text

PDF

Association study of PHOX2B as a candidate gene for Hirschsprung’s disease
  1. M Garcia-Barceló1,
  2. M H Sham2,
  3. V C H Lui3,
  4. B L S Chen3,
  5. J Ott4,
  6. P K H Tam3
  1. 1Division of Paediatric Surgery, University of Hong Kong Medical Center, Queen Mary Hospital, and Department of Biochemistry, University of Hong Kong, Hong Kong SAR, China
  2. 2Department of Biochemistry, University of Hong Kong, Hong Kong SAR, China
  3. 3Division of Paediatric Surgery, University of Hong Kong Medical Center, Queen Mary Hospital, Hong Kong SAR, China
  4. 4Laboratory of Statistical Genetics, Rockefeller University, New York City, USA
  1. Correspondence to:
    Professor P K H Tam, Department of Surgery, University of Hong Kong Medical Center, Queen Mary Hospital, Hong Kong SAR, PR China;
    paultam{at}hkucc.hku.hk

Abstract

Background: Hirschsprung’s disease (HSCR) is a congenital disorder characterised by an absence of ganglion cells in the nerve plexuses of the lower digestive tract. Manifestation of the disease has been linked to mutations in genes that encode the crucial signals for the development of the enteric nervous system—the RET and EDNRB signalling pathways. The Phox2b gene is involved in neurogenesis and regulates Ret expression in mice, in which disruption of the Phox2b results in a HSCR-like phenotype.

Aims: To investigate the contribution of PHOX2B to the HSCR phenotype.

Methods: Using polymerase chain reaction amplification and direct sequencing, we screened PHOX2B coding regions and intron/exon boundaries for mutations and polymorphisms in 91 patients with HSCR and 71 ethnically matched controls. Seventy five HSCR patients with no RET mutations were independently considered. Haplotype and genotype frequencies were compared using the standard case control statistic.

Results: Sequence analysis revealed three new polymorphisms: two novel single nucleotide polymorphisms (A→G1364; A→C2607) and a 15 base pair deletion (DEL2609). Statistically significant differences were found for A→G1364. Genotypes comprising allele G were underrepresented in patients (19% v 36%; χ2=9.30; p=0.0095 and 22% v 36%; χ2=7.38; p=0.024 for patients with no RET mutations). Pairwise linkage disequilibrium (LD) analysis revealed no LD between physically close polymorphisms indicating a hot spot for recombination in exon 3.

Conclusion: The PHOX2B A→G1364 polymorphism is associated with HSCR. Whether it directly contributes to disease susceptibility or represents a marker for a locus in LD with PHOX2B needs further investigation. Our findings are in accordance with the involvement of PHOX2B in the signalling pathways governing the development of enteric neurones.

  • Hirschsprung disease
  • genetic susceptibility
  • PHOX2B
  • polymorphisms
  • HSCR, Hirschsprung’s disease
  • ENS, enteric nervous system
  • LD, linkage disequilibrium
  • SNP, single nucleotide polymorphism
  • PCR, polymerase chain reaction
  • WS4, Waardenburg syndrome type 4
  • TCA, total colonic aganglionosis
  • bp, base pair
  • EH, estimating haplotype frequencies
View Full Text

Statistics from Altmetric.com

Footnotes

    Request Permissions

    If you wish to reuse any or all of this article please use the link below which will take you to the Copyright Clearance Center’s RightsLink service. You will be able to get a quick price and instant permission to reuse the content in many different ways.