RT Journal Article SR Electronic T1 Aberrant gut microbiota alters host metabolome and impacts renal failure in humans and rodents JF Gut JO Gut FD BMJ Publishing Group Ltd and British Society of Gastroenterology SP 2131 OP 2142 DO 10.1136/gutjnl-2019-319766 VO 69 IS 12 A1 Xifan Wang A1 Songtao Yang A1 Shenghui Li A1 Liang Zhao A1 Yanling Hao A1 Junjie Qin A1 Lian Zhang A1 Chengying Zhang A1 Weijing Bian A1 Li Zuo A1 Xiu Gao A1 Baoli Zhu A1 Xin Gen Lei A1 Zhenglong Gu A1 Wei Cui A1 Xiping Xu A1 Zhiming Li A1 Benzhong Zhu A1 Yuan Li A1 Shangwu Chen A1 Huiyuan Guo A1 Hao Zhang A1 Jing Sun A1 Ming Zhang A1 Yan Hui A1 Xiaolin Zhang A1 Xiaoxue Liu A1 Bowen Sun A1 Longjiao Wang A1 Qinglu Qiu A1 Yuchan Zhang A1 Xingqi Li A1 Weiqian Liu A1 Rui Xue A1 Hong Wu A1 DongHua Shao A1 Junling Li A1 Yuanjie Zhou A1 Shaochuan Li A1 Rentao Yang A1 Oluf Borbye Pedersen A1 Zhengquan Yu A1 Stanislav Dusko Ehrlich A1 Fazheng Ren YR 2020 UL http://gut.bmj.com/content/69/12/2131.abstract AB Objective Patients with renal failure suffer from symptoms caused by uraemic toxins, possibly of gut microbial origin, as deduced from studies in animals. The aim of the study is to characterise relationships between the intestinal microbiome composition, uraemic toxins and renal failure symptoms in human end-stage renal disease (ESRD).Design Characterisation of gut microbiome, serum and faecal metabolome and human phenotypes in a cohort of 223 patients with ESRD and 69 healthy controls. Multidimensional data integration to reveal links between these datasets and the use of chronic kidney disease (CKD) rodent models to test the effects of intestinal microbiome on toxin accumulation and disease severity.Results A group of microbial species enriched in ESRD correlates tightly to patient clinical variables and encode functions involved in toxin and secondary bile acids synthesis; the relative abundance of the microbial functions correlates with the serum or faecal concentrations of these metabolites. Microbiota from patients transplanted to renal injured germ-free mice or antibiotic-treated rats induce higher production of serum uraemic toxins and aggravated renal fibrosis and oxidative stress more than microbiota from controls. Two of the species, Eggerthella lenta and Fusobacterium nucleatum, increase uraemic toxins production and promote renal disease development in a CKD rat model. A probiotic Bifidobacterium animalis decreases abundance of these species, reduces levels of toxins and the severity of the disease in rats.Conclusion Aberrant gut microbiota in patients with ESRD sculpts a detrimental metabolome aggravating clinical outcomes, suggesting that the gut microbiota will be a promising target for diminishing uraemic toxicity in those patients.Trial registration number This study was registered at ClinicalTrials.gov (NCT03010696).