RT Journal Article SR Electronic T1 Altered faecal microbiome and metabolome in IgG4-related sclerosing cholangitis and primary sclerosing cholangitis JF Gut JO Gut FD BMJ Publishing Group Ltd and British Society of Gastroenterology SP 899 OP 909 DO 10.1136/gutjnl-2020-323565 VO 71 IS 5 A1 Qiaoyan Liu A1 Bo Li A1 Yikang Li A1 Yiran Wei A1 Bingyuan Huang A1 Jubo Liang A1 Zhengrui You A1 You Li A1 Qiwei Qian A1 Rui Wang A1 Jun Zhang A1 Ruiling Chen A1 Zhuwan Lyu A1 Yong Chen A1 Mingxia Shi A1 Xiao Xiao A1 Qixia Wang A1 Qi Miao A1 Jing-Yuan Fang A1 Merrill Eric Gershwin A1 Min Lian A1 Xiong Ma A1 Ruqi Tang YR 2022 UL http://gut.bmj.com/content/71/5/899.abstract AB Objective Multiple clinical similarities exist between IgG4-related sclerosing cholangitis (IgG4-SC) and primary sclerosing cholangitis (PSC), and while gut dysbiosis has been extensively studied in PSC, the role of the gut microbiota in IgG4-SC remains unknown. Herein, we aimed to evaluate alterations of the gut microbiome and metabolome in IgG4-SC and PSC.Design We performed 16S rRNA gene amplicon sequencing of faecal samples from 135 subjects with IgG4-SC (n=34), PSC (n=37) and healthy controls (n=64). A subset of the samples (31 IgG4-SC, 37 PSC and 45 controls) also underwent untargeted metabolomic profiling.Results Compared with controls, reduced alpha-diversity and shifted microbial community were observed in IgG4-SC and PSC. These changes were accompanied by differences in stool metabolomes. Importantly, despite some common variations in the microbiota composition and metabolic activity, integrative analyses identified distinct host–microbe associations in IgG4-SC and PSC. The disease-associated genera and metabolites tended to associate with the transaminases in IgG4-SC. Notable depletion of Blautia and elevated succinic acid may underlie hepatic inflammation in IgG4-SC. In comparison, potential links between the microbial or metabolic signatures and cholestatic parameters were detected in PSC. Particularly, concordant decrease of Eubacterium and microbiota-derived metabolites, including secondary bile acids, implicated novel host–microbial metabolic pathways involving cholestasis of PSC. Interestingly, the predictive models based on metabolites were more effective in discriminating disease status than those based on microbes.Conclusions Our data reveal that IgG4-SC and PSC possess divergent host–microbe interplays that may be involved in disease pathogenesis. These data emphasise the uniqueness of IgG4-SC.Data are available upon reasonable request. Additional data (beyond those included in the main text and Supplementary Information) are available from the corresponding author upon request.