Table 1

Protein characteristics of iceA variants

JHP1132 HP27 Ca1506 1715
Variant2B2C2D2D'
Amino acids (n)59599495
Cysteine (%)1-151 0001
Proline (%)1-151 0000
Topology: N terminus“in”“in”“in”“in”
Topology: C terminus????
TopPred
 PTM (n)NoneNoneOneOne
 Position(score)58–78 (0.758)23–41 (0.615)
DAS
 PTM (n)NoneOneTwoTwo
 Position32–4137–40, 66–7531–41, 70–76
Helix (%)1-151 11.70.00.00.0
Sheet (%)1-151 41.762.772.354.2
Other (%)1-151 46.737.327.745.8
Class1-151 MixedAll-betaAll-betaAll-beta
  • ?, not determined; Position, amino acid position;

  • 1-151 from JPRED.

  • “in”, orientation inside cell membrane; PTM, putative transmembrane segment; DAS, dense alignment sequence.