Table 1

Deletions and insertions in Helicobacter pylori strains B128 and 7.13, and in vivo-adapted strains isolated from gerbils maintained on iron-depleted or iron-replete diets

DeletionsB128 single colonies7.13 single colonies7.13 iron-depleted single colonies7.13 iron-replete single colonies
LocationGeneHPB8 locusabcabcD1 aD1 bD1
C
D2 aD2 bD2 cD3 aD3 bD3 cR1 aR1 bR1 cR2 aR2 bR2 cR3 aR3 bR3 c
 88333Intergenic43262629312926313339
 132884 tonB1 13827*44.3–
46.2
 132889 tonB1 13827.1–
27.5
 132892 tonB1 13826
 132907 tonB1 13827*
 132926 tonB1 138859079.7–
81.4
80.6–
81.6
77927576
 365607Intergenic94
 378215 galE 40996*
 410076 cheA 44261.0–
74.5*
 410076 cheA 44263.8–
71.3
 410080 cheA 44263*
 693451 cagY 716100100
 693465 cagY 71630*36*56*
 819621 oipA 83893*
 919030 sabA 93092*91*87*81*88*
 1065100Intergenic2544
 1098589 hsdR5 112096*
 1171489120099*97*
 1197192Intergenic26
 1316726 radA 134332*31*38*29*29*32*26*36*28*32*26*28*38*
 1445365 hrgA 147478
 1492146Intergenic2843
 1533081156138*36*42*
 15330851561383642
 1533088156138*36*42*
 1539253Intergenic98
 1584758 hopZ 161691*91*90*81*90*89*90*86*89*90*87*86*88*89*
 1584759 hopZ 161694*100*93*89*97*90*91*88*93*
 1585383 hopZ 1616928990
 1621918166588.2-
94.4
89.9–
97.5
94.1–
99.0
 1621918166598*96*97*98*98*97*99*94*96*98*99*98*97*99*99*98*
 1621919166597*100*99*99*