Gene regulatory networks governing pancreas development

Dev Cell. 2013 Apr 15;25(1):5-13. doi: 10.1016/j.devcel.2013.03.016.

Abstract

Elucidation of cellular and gene regulatory networks (GRNs) governing organ development will accelerate progress toward tissue replacement. Here, we have compiled reference GRNs underlying pancreas development from data mining that integrates multiple approaches, including mutant analysis, lineage tracing, cell purification, gene expression and enhancer analysis, and biochemical studies of gene regulation. Using established computational tools, we integrated and represented these networks in frameworks that should enhance understanding of the surging output of genomic-scale genetic and epigenetic studies of pancreas development and diseases such as diabetes and pancreatic cancer. We envision similar approaches would be useful for understanding the development of other organs.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Acinar Cells / cytology
  • Acinar Cells / metabolism
  • Animals
  • Basic Helix-Loop-Helix Transcription Factors / genetics
  • Basic Helix-Loop-Helix Transcription Factors / metabolism
  • Cell Dedifferentiation
  • Cell Differentiation
  • Computational Biology / methods
  • Data Mining
  • Diabetes Mellitus / genetics
  • Gene Regulatory Networks*
  • Humans
  • Insulin-Secreting Cells / cytology
  • Insulin-Secreting Cells / metabolism
  • Nerve Tissue Proteins / genetics
  • Nerve Tissue Proteins / metabolism
  • Nucleotide Motifs
  • Pancreas / cytology*
  • Pancreas / growth & development*
  • Stem Cells / cytology
  • Stem Cells / metabolism

Substances

  • Basic Helix-Loop-Helix Transcription Factors
  • NEUROG3 protein, human
  • Nerve Tissue Proteins