[HTML][HTML] Mutational signatures reveal the dynamic interplay of risk factors and cellular processes during liver tumorigenesis

E Letouzé, J Shinde, V Renault, G Couchy… - Nature …, 2017 - nature.com
Genomic alterations driving tumorigenesis result from the interaction of environmental
exposures and endogenous cellular processes. With a diversity of risk factors, liver cancer is …

Analysis of liver cancer cell lines identifies agents with likely efficacy against hepatocellular carcinoma and markers of response

S Caruso, AL Calatayud, J Pilet, T La Bella, S Rekik… - Gastroenterology, 2019 - Elsevier
Background and aims Hepatocellular carcinomas (HCCs) are heterogeneous aggressive
tumors with low rates of response to treatment at advanced stages. We screened a large …

[PDF][PDF] Clinical impact of genomic diversity from early to advanced hepatocellular carcinoma

JC Nault, Y Martin, S Caruso, TZ Hirsch, Q Bayard… - …, 2020 - Wiley Online Library
To date, genomic analyses of hepatocellular carcinoma (HCC) have been limited to early
stages obtained from liver resection. We aim to describe the genomic profiling of HCC from …

[HTML][HTML] Cyclin A2/E1 activation defines a hepatocellular carcinoma subclass with a rearrangement signature of replication stress

Q Bayard, L Meunier, C Peneau, V Renault… - Nature …, 2018 - nature.com
Cyclins A2 and E1 regulate the cell cycle by promoting S phase entry and progression.
Here, we identify a hepatocellular carcinoma (HCC) subgroup exhibiting cyclin activation …

Common genetic variation in alcohol-related hepatocellular carcinoma: a case-control genome-wide association study

E Trépo, S Caruso, J Yang, S Imbeaud… - The Lancet …, 2022 - thelancet.com
Background Hepatocellular carcinoma is a frequent consequence of alcohol-related liver
disease, with variable incidence among heavy drinkers. We did a genome-wide association …

[HTML][HTML] Telomere length is key to hepatocellular carcinoma diversity and telomerase addiction is an actionable therapeutic target

M Ningarhari, S Caruso, TZ Hirsch, Q Bayard… - Journal of …, 2021 - Elsevier
Background & Aims Telomerase activation is the earliest event in hepatocellular carcinoma
(HCC) development. Thus, we aimed to elucidate the role of telomere length maintenance …

[PDF][PDF] A 17‐beta‐hydroxysteroid dehydrogenase 13 variant protects from hepatocellular carcinoma development in alcoholic liver disease

J Yang, E Trépo, P Nahon, Q Cao, C Moreno… - …, 2019 - Wiley Online Library
Recently, a loss of function variant (rs72613567) in 17‐beta‐hydroxysteroid dehydrogenase
13 (HSD17B13) has been identified as protective of nonalcoholic (NAFLD) and alcoholic …

Adeno-associated virus in the liver: natural history and consequences in tumour development

T La Bella, S Imbeaud, C Peneau, I Mami, S Datta… - Gut, 2020 - gut.bmj.com
Objective Adeno-associated virus (AAV) is a defective mono-stranded DNA virus, endemic
in human population (35%–80%). Recurrent clonal AAV2 insertions are associated with the …

Integrated genomic analysis identifies driver genes and cisplatin-resistant progenitor phenotype in pediatric liver cancer

TZ Hirsch, J Pilet, G Morcrette, A Roehrig, BJE Monteiro… - Cancer discovery, 2021 - AACR
Pediatric liver cancers (PLC) comprise diverse diseases affecting infants, children, and
adolescents. Despite overall good prognosis, PLCs display heterogeneous response to …

Palimpsest: an R package for studying mutational and structural variant signatures along clonal evolution in cancer

J Shinde, Q Bayard, S Imbeaud, TZ Hirsch, F Liu… - …, 2018 - academic.oup.com
Cancer genomes are altered by various mutational processes and, like palimpsests, bear
the signatures of these different processes. The Palimpsest R package provides a complete …