User profiles for "author:Terence P Speed"
Terence P SpeedWalter & Eliza Hall Institute of Medical Research Verified email at wehi.edu.au Cited by 111210 |
Comparison of methods for image analysis on cDNA microarray data
Microarrays are part of a new class of biotechnologies which allow the monitoring of
expression levels for thousands of genes simultaneously. Image analysis is an important …
expression levels for thousands of genes simultaneously. Image analysis is an important …
Regulation of apicomplexan actin-based motility
Apicomplexan parasites are an ancient group of protozoan parasites that includes several
significant pathogens of humans and animals. To target and invade host cells they use a …
significant pathogens of humans and animals. To target and invade host cells they use a …
Analysis of cDNA microarray images
Microarrays are part of a new class of biotechnologies that allow the monitoring of
expression levels for thousands of genes simultaneously. Image analysis is an important …
expression levels for thousands of genes simultaneously. Image analysis is an important …
[PDF][PDF] Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1
Summary The Cancer Genome Atlas Network recently cataloged recurrent genomic
abnormalities in glioblastoma multiforme (GBM). We describe a robust gene expression …
abnormalities in glioblastoma multiforme (GBM). We describe a robust gene expression …
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
There are many sources of systematic variation in cDNA microarray experiments which
affect the measured gene expression levels (eg differences in labeling efficiency between …
affect the measured gene expression levels (eg differences in labeling efficiency between …
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
RA Irizarry, B Hobbs, F Collin, YD Beazer‐Barclay… - …, 2003 - academic.oup.com
In this paper we report exploratory analyses of high‐density oligonucleotide array data from
the Affymetrix GeneChip® system with the objective of improving upon currently used …
the Affymetrix GeneChip® system with the objective of improving upon currently used …
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
Motivation: When running experiments that involve multiple high density oligonucleotide
arrays, it is important to remove sources of variation between arrays of non-biological origin …
arrays, it is important to remove sources of variation between arrays of non-biological origin …
Summaries of Affymetrix GeneChip probe level data
High density oligonucleotide array technology is widely used in many areas of biomedical
research for quantitative and highly parallel measurements of gene expression. Affymetrix …
research for quantitative and highly parallel measurements of gene expression. Affymetrix …
Comparison of discrimination methods for the classification of tumors using gene expression data
A reliable and precise classification of tumors is essential for successful diagnosis and
treatment of cancer. cDNA microarrays and high-density oligonucleotide chips are novel …
treatment of cancer. cDNA microarrays and high-density oligonucleotide chips are novel …
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
DNA microarrays are a new and promising biotechnology which allows the monitoring of
expression levels in cells for thousands of genes simultaneously. The present paper …
expression levels in cells for thousands of genes simultaneously. The present paper …